STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCP96671.1Protein of unknown function. (326 aa)    
Predicted Functional Partners:
era
GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
       0.671
SCP96670.1
Hypothetical protein.
       0.634
recO
DNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination.
 
     0.617
SCP95272.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
 
 0.564
SCP96350.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
 
 0.564
SCP99489.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
 
 0.564
SCP97154.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
 
 0.550
SCP99372.1
Hypothetical protein.
  
 
 0.550
SCP96846.1
RNA polymerase sigma factor, sigma-70 family.
  
 
 0.549
SCP97030.1
RNA polymerase sporulation-specific sigma factor; Belongs to the sigma-70 factor family.
  
 
 0.549
Your Current Organism:
Anaerobium acetethylicum
NCBI taxonomy Id: 1619234
Other names: A. acetethylicum, Anaerobium acetethylicum Patil et al. 2015, Clostridiales bacterium GluBS11, DSM 29698, KCTC 15450, LMG 28619, LMG:28619, strain GluBS11
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