STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCP98119.1DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain. (225 aa)    
Predicted Functional Partners:
SCP98120.1
Signal transduction histidine kinase.
 0.991
SCP95632.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
0.989
SCP98881.1
Signal transduction histidine kinase.
 0.917
SCP94868.1
Signal transduction histidine kinase.
 0.913
SCP97116.1
Signal transduction histidine kinase.
 0.911
SCP99387.1
Signal transduction histidine kinase.
  0.909
SCP94837.1
Signal transduction histidine kinase.
 0.899
SCP97265.1
Signal transduction histidine kinase.
 0.897
SCP98563.1
Signal transduction histidine kinase.
  0.888
SCP95395.1
Signal transduction histidine kinase.
 0.885
Your Current Organism:
Anaerobium acetethylicum
NCBI taxonomy Id: 1619234
Other names: A. acetethylicum, Anaerobium acetethylicum Patil et al. 2015, Clostridiales bacterium GluBS11, DSM 29698, KCTC 15450, LMG 28619, LMG:28619, strain GluBS11
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