STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCP99285.1Xylan 1,4-beta-xylosidase; Belongs to the glycosyl hydrolase 43 family. (548 aa)    
Predicted Functional Partners:
SCP99284.1
Cellulase (glycosyl hydrolase family 5); Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
  
 0.942
SCP95402.1
Putative esterase.
    
 0.801
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
  
 
 0.746
SCP98457.1
Beta-xylosidase.
    
  0.716
SCP96488.1
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
  
 
 0.713
uxaC
Glucuronate isomerase.
    
 0.699
uxaC-2
Glucuronate isomerase.
    
 0.699
SCP97404.1
Glycosyl hydrolases family 35.
 
  
 0.631
SCP99283.1
AraC-type DNA-binding protein.
 
  
  0.616
SCP99298.1
Cadherin-like beta sandwich domain-containing protein.
  
 
 0.555
Your Current Organism:
Anaerobium acetethylicum
NCBI taxonomy Id: 1619234
Other names: A. acetethylicum, Anaerobium acetethylicum Patil et al. 2015, Clostridiales bacterium GluBS11, DSM 29698, KCTC 15450, LMG 28619, LMG:28619, strain GluBS11
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