STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARJ03988.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (326 aa)    
Predicted Functional Partners:
ARJ05842.1
Acetamidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
      0.808
ARJ06935.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.741
ARJ03990.1
Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aldehyde dehydrogenase family.
 
     0.615
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.517
ARJ07113.1
Flavin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.475
ARJ03989.1
4-hydroxyphenylacetate 3-monooxygenase, oxygenase component; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.475
ARJ04284.1
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.
  
    0.446
ARJ03976.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.429
Your Current Organism:
Cnuibacter physcomitrellae
NCBI taxonomy Id: 1619308
Other names: C. physcomitrellae, CGMCC 1.15041, Cnuibacter physcomitrellae Zhou et al. 2016, DSM 29843, Microbacteriaceae bacterium XA, strain XA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.