STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARJ04033.1Alpha-ketoglutarate-dependent dioxygenase AlkB; Derived by automated computational analysis using gene prediction method: Protein Homology. (213 aa)    
Predicted Functional Partners:
ARJ04034.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.542
ARJ04035.1
Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.542
ARJ04036.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.521
ARJ04037.1
Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.486
ARJ05072.1
3-methyladenine DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.483
ARJ04938.1
2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.
   
    0.465
ARJ06270.1
Hypothetical protein; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.
   
    0.465
ARJ06715.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.465
ARJ07458.1
Hypothetical protein; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.
   
    0.465
ARJ06895.1
2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.
   
    0.465
Your Current Organism:
Cnuibacter physcomitrellae
NCBI taxonomy Id: 1619308
Other names: C. physcomitrellae, CGMCC 1.15041, Cnuibacter physcomitrellae Zhou et al. 2016, DSM 29843, Microbacteriaceae bacterium XA, strain XA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.