STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARJ05259.12-hydroxy-3-carboxy-6-oxo-7-methylocta-2, 4-dienoate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (323 aa)    
Predicted Functional Partners:
ARJ05258.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      0.935
ARJ07291.1
Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.772
ARJ05262.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    
 0.695
kynA
Tryptophan 2,3-dioxygenase; Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety.
  
 0.633
ARJ05257.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.526
ARJ04305.1
Cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.505
ARJ05260.1
Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.492
ARJ07148.1
Tungsten formylmethanofuran dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.480
ARJ05255.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.479
ARJ05256.1
Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.457
Your Current Organism:
Cnuibacter physcomitrellae
NCBI taxonomy Id: 1619308
Other names: C. physcomitrellae, CGMCC 1.15041, Cnuibacter physcomitrellae Zhou et al. 2016, DSM 29843, Microbacteriaceae bacterium XA, strain XA
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