KJK13558.1 protein (Terrabacter sp. 28) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Cooccurrence

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[Homology]

Score

KJK13558.1

Sigma-70 protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (216 aa)

Predicted Functional Partners:

KJK13559.1

0.928

KJK11029.1

0.580

KJK11030.1

0.576

KJK10989.1

0.556

KJK10583.1

0.556

KJK10731.1

0.554

KJK13303.1

0.520

KJK11540.1

0.520

KJK13879.1

0.431

KJK12866.1

0.431

Your Current Organism:

Terrabacter sp. 28

NCBI taxonomy Id: 1619947
Other names: T. sp. 28

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KJK10583.1	KJK10989.1	UB45_17545	UB45_15810	DNA-directed RNA polymerase subunit omega; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-directed RNA polymerase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KJK10583.1	KJK11029.1	UB45_17545	UB45_16050	DNA-directed RNA polymerase subunit omega; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-directed RNA polymerase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KJK10583.1	KJK11030.1	UB45_17545	UB45_16055	DNA-directed RNA polymerase subunit omega; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-directed RNA polymerase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KJK10583.1	KJK13558.1	UB45_17545	UB45_01990	DNA-directed RNA polymerase subunit omega; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sigma-70 protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.556
KJK10731.1	KJK13558.1	UB45_17985	UB45_01990	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sigma-70 protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.554
KJK10989.1	KJK10583.1	UB45_15810	UB45_17545	DNA-directed RNA polymerase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-directed RNA polymerase subunit omega; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KJK10989.1	KJK11029.1	UB45_15810	UB45_16050	DNA-directed RNA polymerase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-directed RNA polymerase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KJK10989.1	KJK11030.1	UB45_15810	UB45_16055	DNA-directed RNA polymerase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-directed RNA polymerase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KJK10989.1	KJK13558.1	UB45_15810	UB45_01990	DNA-directed RNA polymerase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sigma-70 protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.556
KJK11029.1	KJK10583.1	UB45_16050	UB45_17545	DNA-directed RNA polymerase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-directed RNA polymerase subunit omega; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KJK11029.1	KJK10989.1	UB45_16050	UB45_15810	DNA-directed RNA polymerase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-directed RNA polymerase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KJK11029.1	KJK11030.1	UB45_16050	UB45_16055	DNA-directed RNA polymerase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-directed RNA polymerase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KJK11029.1	KJK13558.1	UB45_16050	UB45_01990	DNA-directed RNA polymerase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sigma-70 protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.580
KJK11030.1	KJK10583.1	UB45_16055	UB45_17545	DNA-directed RNA polymerase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-directed RNA polymerase subunit omega; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KJK11030.1	KJK10989.1	UB45_16055	UB45_15810	DNA-directed RNA polymerase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-directed RNA polymerase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KJK11030.1	KJK11029.1	UB45_16055	UB45_16050	DNA-directed RNA polymerase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-directed RNA polymerase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KJK11030.1	KJK13558.1	UB45_16055	UB45_01990	DNA-directed RNA polymerase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sigma-70 protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.576
KJK11540.1	KJK13558.1	UB45_13170	UB45_01990	Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sigma-70 protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.520
KJK12866.1	KJK13558.1	UB45_06080	UB45_01990	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sigma-70 protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.431
KJK13303.1	KJK13558.1	UB45_02920	UB45_01990	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sigma-70 protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.520