Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CEM60721.1Smr domain protein. (193 aa)    
Predicted Functional Partners:
CEM60717.1
Von Willebrand factor type A domain protein.
       0.814
CEM60715.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.812
CEM60716.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.801
CEM60719.1
Tetratricopeptide repeat protein.
       0.792
CEM60718.1
Von Willebrand factor type A domain protein.
       0.768
CEM60720.1
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.
       0.768
rpsU
30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
  
 
   0.642
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
   0.607
rpmC
50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
  
 
   0.607
rpsL
30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.
   
   0.581
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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