troD protein (Treponema phagedenis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

troD

Zinc transport system membrane protein TroD. (367 aa)

Predicted Functional Partners:

troB

0.999

troA

0.997

troC

0.967

CEM61640.1

0.938

CEM60753.1

0.872

CEM61639.1

0.869

hbpB

0.630

hbpB-2

0.630

fbpC

0.559

CEM61638.1

0.489

Your Current Organism:

Treponema phagedenis

NCBI taxonomy Id: 162
Other names: T. phagedenis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CEM60753.1	troA	TPHV1_100073	TPHV1_100077	Iron dependent repressor DNA binding domain protein.	Periplasmic zinc-binding protein TroA; Belongs to the bacterial solute-binding protein 9 family.	0.721
CEM60753.1	troB	TPHV1_100073	TPHV1_100076	Iron dependent repressor DNA binding domain protein.	Zinc transport system ATP-binding protein TroB.	0.899
CEM60753.1	troC	TPHV1_100073	TPHV1_100075	Iron dependent repressor DNA binding domain protein.	Zinc transport system membrane protein TroC.	0.891
CEM60753.1	troD	TPHV1_100073	TPHV1_100074	Iron dependent repressor DNA binding domain protein.	Zinc transport system membrane protein TroD.	0.872
CEM61638.1	CEM61639.1	TPHV1_20175	TPHV1_20176	Putative metal transport system membrane protein TP_0036; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Putative metal transport system ATP-binding protein TP_0035; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	0.996
CEM61638.1	CEM61640.1	TPHV1_20175	TPHV1_20177	Putative metal transport system membrane protein TP_0036; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Uncharacterized periplasmic metal-binding protein TP_0034; Belongs to the bacterial solute-binding protein 9 family.	0.986
CEM61638.1	hbpB	TPHV1_20175	TPHV1_60099	Putative metal transport system membrane protein TP_0036; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Hemin-binding protein B.	0.630
CEM61638.1	hbpB-2	TPHV1_20175	TPHV1_60100	Putative metal transport system membrane protein TP_0036; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Hemin-binding protein B.	0.630
CEM61638.1	troA	TPHV1_20175	TPHV1_100077	Putative metal transport system membrane protein TP_0036; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Periplasmic zinc-binding protein TroA; Belongs to the bacterial solute-binding protein 9 family.	0.870
CEM61638.1	troB	TPHV1_20175	TPHV1_100076	Putative metal transport system membrane protein TP_0036; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Zinc transport system ATP-binding protein TroB.	0.913
CEM61638.1	troC	TPHV1_20175	TPHV1_100075	Putative metal transport system membrane protein TP_0036; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Zinc transport system membrane protein TroC.	0.498
CEM61638.1	troD	TPHV1_20175	TPHV1_100074	Putative metal transport system membrane protein TP_0036; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Zinc transport system membrane protein TroD.	0.489
CEM61639.1	CEM61638.1	TPHV1_20176	TPHV1_20175	Putative metal transport system ATP-binding protein TP_0035; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Putative metal transport system membrane protein TP_0036; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	0.996
CEM61639.1	CEM61640.1	TPHV1_20176	TPHV1_20177	Putative metal transport system ATP-binding protein TP_0035; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Uncharacterized periplasmic metal-binding protein TP_0034; Belongs to the bacterial solute-binding protein 9 family.	0.988
CEM61639.1	hbpB	TPHV1_20176	TPHV1_60099	Putative metal transport system ATP-binding protein TP_0035; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Hemin-binding protein B.	0.723
CEM61639.1	hbpB-2	TPHV1_20176	TPHV1_60100	Putative metal transport system ATP-binding protein TP_0035; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Hemin-binding protein B.	0.723
CEM61639.1	troA	TPHV1_20176	TPHV1_100077	Putative metal transport system ATP-binding protein TP_0035; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Periplasmic zinc-binding protein TroA; Belongs to the bacterial solute-binding protein 9 family.	0.814
CEM61639.1	troC	TPHV1_20176	TPHV1_100075	Putative metal transport system ATP-binding protein TP_0035; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Zinc transport system membrane protein TroC.	0.877
CEM61639.1	troD	TPHV1_20176	TPHV1_100074	Putative metal transport system ATP-binding protein TP_0035; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Zinc transport system membrane protein TroD.	0.869
CEM61640.1	CEM61638.1	TPHV1_20177	TPHV1_20175	Uncharacterized periplasmic metal-binding protein TP_0034; Belongs to the bacterial solute-binding protein 9 family.	Putative metal transport system membrane protein TP_0036; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	0.986