STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEM60361.1Tetratricopeptide repeat protein. (223 aa)    
Predicted Functional Partners:
rpsA
Ribosomal protein S1.
  
    0.813
CEM60360.1
Sigma-54 interaction domain protein.
       0.813
CEM60362.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.741
CEM62263.1
Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function.
  
  
 0.638
CEM60358.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.501
rlpA
Sporulation and cell division repeat protein; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
  
 
 0.419
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.