STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pgsCPoly-gamma-glutamate biosynthesis protein PgsC. (142 aa)    
Predicted Functional Partners:
pgsB
Poly-gamma-glutamate synthase PgsB.
 
  
 0.959
PgsW
Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function.
       0.801
CEM60370.1
Citrate transporter.
  
     0.764
ggt
Gamma-glutamyltranspeptidase.
 
   
 0.674
CEM61651.1
Bacterial capsule synthesis protein.
  
  
 0.407
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.