Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
pgsCPoly-gamma-glutamate biosynthesis protein PgsC. (142 aa)    
Predicted Functional Partners:
pgsB
Poly-gamma-glutamate synthase PgsB.
 
  
 0.959
PgsW
Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function.
       0.806
CEM60370.1
Citrate transporter.
  
     0.764
ggt
Gamma-glutamyltranspeptidase.
 
   
 0.653
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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