Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
argRArginine repressor; Regulates arginine biosynthesis genes. (157 aa)    
Predicted Functional Partners:
ygeW
Conserved hypothetical protein; Homologs of previously reported genes of unknown function; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.
  
  
 0.784
argI
Ornithine carbamoyltransferase 1; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.
  
  
 0.784
yjgF
Ketoacid-binding protein; Function of homologous gene experimentally demonstrated in an other organism; putative enzyme.
       0.584
CEM60400.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.576
CEM60397.1
ParB-like protein.
       0.472
fliJ
Flagellar export protein FliJ.
   
  
 0.463
CEM62560.1
PTS system, beta-glucoside-specific, IIABC component.
      
 0.457
CEM60454.1
R3H domain protein.
  
    0.452
argS
Arginine--tRNA ligase.
  
  
 0.438
CEM62770.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
  
 0.437
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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