STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfbCdTDP-4-deoxyrhamnose-3,5-epimerase (fragment); Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family. (144 aa)    
Predicted Functional Partners:
rmlB
dTDP-glucose 4,6 dehydratase, NAD(P)-binding; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
 0.999
rfbD
dTDP-4-dehydrorhamnose reductase (fragment); Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
 
 
 0.998
rmlA
Glucose-1-phosphate thymidylyltransferase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 0.972
CEM60415.1
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.
  
  
 0.908
CEM61856.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
  
 0.846
CEM60408.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
  
 0.745
CEM60833.1
Glycosyltransferase, group 1 family protein.
  
  
 0.745
CEM62722.1
Glycosyltransferase, group 1 family protein.
  
  
 0.745
CEM61942.1
Cytidylyltransferase.
  
  
 0.585
CEM61943.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
  
 0.567
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.