Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
rffATDP-4-oxo-6-deoxy-D-glucose transaminase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (376 aa)    
Predicted Functional Partners:
CEM60417.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
  
 0.929
rho
Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.
      0.863
CEM61109.1
Polysaccharide biosynthesis protein.
 
  
 0.833
wbpD
UDP-2-acetamido-3-amino-2, 3-dideoxy-D-glucuronate N-acetyltransferase.
 
  
 0.814
CEM60414.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
  
 0.809
rmlA
Glucose-1-phosphate thymidylyltransferase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
  
 0.808
CEM60415.1
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.
 
  
 0.764
CEM60416.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
  
 0.752
CEM60609.1
DegT/DnrJ/EryC1/StrS aminotransferase family protein; Belongs to the DegT/DnrJ/EryC1 family.
  
     0.687
CEM60412.1
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.
  
    0.599
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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