Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CEM60425.1Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (139 aa)    
Predicted Functional Partners:
CEM60426.1
DNA polymerase subunit beta (fragment).
       0.789
CEM63426.1
Acetyltransferase (fragment).
   
 
 0.753
degT
Pleiotropic regulatory protein.
       0.741
CEM60421.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
     0.591
CEM60427.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.509
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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