Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
fbpCFe(3+) ions import ATP-binding protein FbpC; Belongs to the ABC transporter superfamily. (348 aa)    
Predicted Functional Partners:
CEM60445.1
ABC transporter, permease protein.
 
 0.993
CEM60447.1
ABC transporter, solute-binding protein.
 
 
 0.989
CEM61349.1
ABC-type Fe3+ transport system, permease component.
 0.973
CEM61347.1
ABC transporter, solute-binding protein.
 
 
 0.936
CEM62154.1
ABC transporter, permease protein.
 
 0.936
CEM62155.1
ABC transporter, permease protein.
 
 0.927
CEM61348.1
ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 
0.916
potA
Spermidine/putrescine import ATP-binding protein PotA; Belongs to the ABC transporter superfamily.
  
  
 
0.910
ywjA
Uncharacterized ABC transporter ATP-binding protein YwjA.
 
     
0.861
modB
Molybdate ABC transporter, permease protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
   
 0.795
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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