Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CEM60447.1ABC transporter, solute-binding protein. (336 aa)    
Predicted Functional Partners:
CEM60445.1
ABC transporter, permease protein.
 
 
 0.996
fbpC
Fe(3+) ions import ATP-binding protein FbpC; Belongs to the ABC transporter superfamily.
 
 
 0.989
CEM61349.1
ABC-type Fe3+ transport system, permease component.
 
 
 0.984
CEM61347.1
ABC transporter, solute-binding protein.
  
  
 
0.927
potA
Spermidine/putrescine import ATP-binding protein PotA; Belongs to the ABC transporter superfamily.
 
 
 0.904
CEM61348.1
ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.889
CEM61456.1
ABC transporter, permease protein.
 
  
 0.868
CEM61455.1
ABC transporter, ATP-binding protein.
 
  
 0.406
tpd
34 kDa membrane antigen.
   
  
 0.403
CEM60428.1
2-aminoethylphosphonate--pyruvate transaminase.
 
  
 0.400
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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