Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CEM60459.1Iron dependent repressor DNA binding domain protein. (170 aa)    
Predicted Functional Partners:
CEM60458.1
Hypothetical protein; No homology to any previously reported sequences.
       0.571
troB
Zinc transport system ATP-binding protein TroB.
 
  
 0.554
tpx
Putative thiol peroxidase; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides.
  
  
 0.530
troC
Zinc transport system membrane protein TroC.
  
  
 0.501
CEM60460.1
Putative 4-alpha-glucanotransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
       0.471
troA
Periplasmic zinc-binding protein TroA; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.467
troD
Zinc transport system membrane protein TroD.
  
  
 0.465
rpmH
50S ribosomal protein L34; Function of homologous gene experimentally demonstrated in an other organism; structure; Belongs to the bacterial ribosomal protein bL34 family.
       0.458
rpoN
RNA polymerase sigma-54 factor.
   
    0.449
CEM61644.1
Transcriptional regulator, Fur family; Belongs to the Fur family.
  
  
 0.431
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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