Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CEM60506.1Hypothetical protein; No homology to any previously reported sequences. (200 aa)    
Predicted Functional Partners:
CEM60507.1
HNH endonuclease (fragment).
     0.994
ecoRIM
Modification methylase EcoRI.
 
  
 0.916
CEM60505.1
Hypothetical protein; No homology to any previously reported sequences.
       0.628
CEM63415.1
TraG/TraD/VirD4 bacterial conjugation protein (fragment).
   
 
 0.605
CEM62058.1
Phosphoribosylformylglycinamidine synthase.
  
    0.499
CEM62248.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.408
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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