STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEM60617.1ABC transporter, substrate-binding protein, family 5. (529 aa)    
Predicted Functional Partners:
oppB
Oligopeptide transporter subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 0.998
CEM60619.1
ABC transporter, permease protein.
 
 0.993
oppD
Oligopeptide transporter subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Belongs to the ABC transporter superfamily.
 
 0.988
oppF
Oligopeptide transporter subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Belongs to the ABC transporter superfamily.
 
 
 0.985
CEM61410.1
ABC transporter, permease protein (fragment).
 
 
 0.914
CEM61411.1
ABC transporter, permease protein.
 
  
 0.814
CEM63156.1
ABC transporter, permease protein.
 
 
 0.785
CEM62980.1
Cobalt transport protein.
  
 0.734
CEM61409.1
ABC transporter, permease protein (fragment).
 
 
 0.720
dppF
Dipeptide transporter; Function of homologous gene experimentally demonstrated in an other organism; transporter; Belongs to the ABC transporter superfamily.
 
  
 0.681
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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