Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
oppDOligopeptide transporter subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Belongs to the ABC transporter superfamily. (349 aa)    
Predicted Functional Partners:
CEM60619.1
ABC transporter, permease protein.
 0.999
oppB
Oligopeptide transporter subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 0.998
CEM63155.1
ABC transporter, permease protein.
 
 0.992
CEM60617.1
ABC transporter, substrate-binding protein, family 5.
 
 0.988
CEM61411.1
ABC transporter, permease protein.
 
 0.985
oppF
Oligopeptide transporter subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Belongs to the ABC transporter superfamily.
 
  
0.967
CEM61413.1
ABC transporter, ATP-binding protein.
  
0.953
CEM61410.1
ABC transporter, permease protein (fragment).
 
 
 0.922
CEM63156.1
ABC transporter, permease protein.
 
 
 0.922
CEM61348.1
ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
     
0.899
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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