Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yaeTOuter membrane protein assembly complex, YaeT protein. (827 aa)    
Predicted Functional Partners:
CEM60635.1
Outer membrane protein.
  
  
 0.946
rseP
Putative zinc metalloprotease TP_0600; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.917
lptB
Putative lipopolysaccharide transport protein B: ATP-binding component of ABC superfamily; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
  
 0.905
CEM61206.1
Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function.
  
 
 0.884
rpsA
Ribosomal protein S1.
 
   0.855
CEM61816.1
Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function.
  
  
 0.831
CEM60452.1
Peptidyl-prolyl cis-trans isomerase.
  
 
 0.797
lnt-2
Apolipoprotein N-acyltransferase 1; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily.
 
   
 0.788
CEM62852.1
Permease, YjgP/YjgQ family.
 
   
 0.779
CEM61611.1
Efflux ABC transporter, permease protein.
 
   
 0.778
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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