Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CEM60649.1ABC transporter, permease protein. (294 aa)    
Predicted Functional Partners:
CEM60648.1
ABC transporter, solute-binding protein.
 0.993
CEM60650.1
ABC transporter, permease protein.
 
 0.981
ycjV
Putative sugar transporter subunit: ATP-binding component of ABC superfamily transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
 0.941
CEM61107.1
ABC transporter, permease protein.
 
 0.940
CEM62310.1
ABC transporter, permease protein.
 
 0.916
CEM63054.1
ABC transporter, permease protein.
 
 0.902
CEM63232.1
ABC transporter, permease protein.
 
 
 0.894
CEM63236.1
ABC transporter, permease protein.
 
 
 0.892
CEM61777.1
ABC transporter, permease protein.
 
 
 0.889
CEM62957.1
Protein LplC (fragment).
 
 
 0.864
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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