Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CEM60662.1Serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family. (478 aa)    
Predicted Functional Partners:
mrdA
Penicillin-binding protein 2.
 
 
 0.966
CEM62999.1
Penicillin-binding protein, transpeptidase domain protein.
 
 
 0.945
CEM62589.1
Penicillin-binding protein, 1A family.
  
  
 0.941
CEM61828.1
Serine-type D-Ala-D-Ala carboxypeptidase.
     
 0.915
CEM61628.1
Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function.
     
 0.912
CEM61834.1
Beta-lactamase.
     
 0.912
rlpA
Sporulation and cell division repeat protein; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
  
  
 0.585
ftsW
Cell division protein FtsW; Belongs to the SEDS family.
 
   
 0.549
murG
Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.
 
   
 0.502
CEM62583.1
Polysaccharide deacetylase.
 
  
 0.482
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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