Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BamDTetratricopeptide repeat protein. (318 aa)    
Predicted Functional Partners:
CEM60670.1
Tetratricopeptide repeat protein.
  
  
 0.830
CEM61592.1
OmpA family protein.
 
  
 0.821
rpe
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
       0.811
CEM60669.1
Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function.
       0.809
CEM62513.1
Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function.
 
   0.794
CEM63036.1
Outer membrane lipoprotein carrier protein LolA.
 
    0.777
CEM61816.1
Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function.
 
   
 0.776
CEM61762.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.774
CEM62339.1
Tetratricopeptide repeat protein.
  
     0.770
CEM62504.1
Tetratricopeptide repeat protein.
  
     0.769
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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