STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEM60942.1OmpA family protein. (165 aa)    
Predicted Functional Partners:
CEM62263.1
Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function.
  
 
 0.655
nifJ
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.640
CEM60657.1
LysM domain protein.
 
  
 0.584
CEM62461.1
TonB-dependent receptor plug domain protein.
  
   
 0.515
CEM60635.1
Outer membrane protein.
  
 
 0.506
CEM63095.1
Pentapeptide repeat family protein.
 
 
 0.506
CEM60944.1
Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function.
       0.498
rpsF
30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
  
   0.466
rplS
50S ribosomal subunit protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
 
 
 0.464
CEM60941.1
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.
       0.462
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.