STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ygeWConserved hypothetical protein; Homologs of previously reported genes of unknown function; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. (397 aa)    
Predicted Functional Partners:
ygeY
Putative peptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.951
CEM61144.1
Putative selenate reductase, YgfK subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
   
 0.870
arcA
Arginine deiminase.
  
  
 0.820
yqeA
Amino acid (carbamate) kinase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the carbamate kinase family.
 
  
 0.816
SsnA
Putative chlorohydrolase/aminohydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.795
Xdh
Selenium-dependent molybdenum hydroxylase 1.
 
    0.790
argR
Arginine repressor; Regulates arginine biosynthesis genes.
  
  
 0.787
hyuA
D-stereospecific phenylhydantoinase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
 0.741
CEM61140.1
YheO-like protein.
       0.696
ygeX
2,3-diaminopropionate ammonia-lyase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
    0.598
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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