STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mreDRod shape-determining protein MreD. (168 aa)    
Predicted Functional Partners:
mreC
Cell shape-determining protein MreC; Involved in formation and maintenance of cell shape.
  
 
 0.990
mrdB
Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
  
  
 0.919
mreB
Cell wall structural complex MreBCD, actin-like component MreB; Function of homologous gene experimentally demonstrated in an other organism; structure.
  
  
 0.914
mrdA
Penicillin-binding protein 2.
  
  
 0.859
CEM61172.1
Tetratricopeptide repeat protein.
 
     0.826
CEM60811.1
POTRA domain protein, FtsQ-type; Essential cell division protein.
  
  
 0.659
CEM63035.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
  
 0.555
CEM62684.1
PASTA domain protein.
  
  
 0.553
CEM61976.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.529
CEM62513.1
Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.526
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.