STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEM61172.1Tetratricopeptide repeat protein. (312 aa)    
Predicted Functional Partners:
mreD
Rod shape-determining protein MreD.
 
     0.826
mrdA
Penicillin-binding protein 2.
 
    0.823
mrdB
Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
       0.791
mreC
Cell shape-determining protein MreC; Involved in formation and maintenance of cell shape.
       0.791
mreB
Cell wall structural complex MreBCD, actin-like component MreB; Function of homologous gene experimentally demonstrated in an other organism; structure.
       0.791
CEM61762.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
   
 0.777
CEM61816.1
Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function.
  
  
 0.775
CEM61592.1
OmpA family protein.
  
     0.773
CEM63036.1
Outer membrane lipoprotein carrier protein LolA.
 
     0.773
CEM60801.1
Fibronectin type III domain protein.
  
     0.770
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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