STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gcdAGlutaconyl-CoA decarboxylase subunit alpha. (585 aa)    
Predicted Functional Partners:
gcdC
Glutaconyl-CoA decarboxylase subunit gamma.
 
 0.999
bcd
Acyl-CoA dehydrogenase, short-chain specific.
 
 0.971
crt
3-hydroxybutyryl-CoA dehydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.964
gcdB
Glutaconyl-CoA decarboxylase subunit beta.
 
 
 0.939
CEM61273.1
Oxaloacetate decarboxylase gamma chain; Catalyzes the decarboxylation of oxaloacetate coupled to Na(+) translocation; Belongs to the OadG family.
    
 0.927
oadB
Oxaloacetate decarboxylase beta chain 1.
  
 
 0.911
gctB
Glutaconate CoA-transferase subunit B.
 
 
 0.885
gctA
Glutaconate CoA-transferase subunit A.
 
  
 0.881
CEM61966.1
Rubredoxin.
 
 0.878
fldB
R-phenyllactate dehydratase subunit alpha.
 
     0.828
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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