Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CEM61407.1Transcriptional regulator, AraC family. (301 aa)    
Predicted Functional Partners:
CEM62548.1
AraC-like ligand binding domain protein.
  
     0.753
CEM61784.1
Diguanylate cyclase (GGDEF) domain protein (fragment).
   
  
 0.663
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.660
CEM61408.1
ABC transporter, substrate-binding protein, family 5.
     
 0.542
CEM61409.1
ABC transporter, permease protein (fragment).
     
 0.542
CEM61410.1
ABC transporter, permease protein (fragment).
     
 0.542
CEM61411.1
ABC transporter, permease protein.
       0.533
CEM61412.1
ABC transporter, ATP-binding protein.
       0.533
CEM61413.1
ABC transporter, ATP-binding protein.
       0.533
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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