STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEM61407.1Transcriptional regulator, AraC family. (301 aa)    
Predicted Functional Partners:
CEM62548.1
AraC-like ligand binding domain protein.
  
     0.753
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.668
CEM61784.1
Diguanylate cyclase (GGDEF) domain protein (fragment).
   
  
 0.558
CEM61409.1
ABC transporter, permease protein (fragment).
     
 0.542
CEM61410.1
ABC transporter, permease protein (fragment).
     
 0.542
CEM61408.1
ABC transporter, substrate-binding protein, family 5.
     
 0.541
CEM61411.1
ABC transporter, permease protein.
       0.533
CEM61412.1
ABC transporter, ATP-binding protein.
       0.533
CEM61413.1
ABC transporter, ATP-binding protein.
       0.533
fruA
PTS system fructose-specific EIIABC component.
   
 
 0.421
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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