Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CEM61409.1ABC transporter, permease protein (fragment). (156 aa)    
Predicted Functional Partners:
CEM61408.1
ABC transporter, substrate-binding protein, family 5.
 
 
 0.988
CEM61411.1
ABC transporter, permease protein.
 
 
 0.978
CEM61410.1
ABC transporter, permease protein (fragment).
     0.973
CEM61412.1
ABC transporter, ATP-binding protein.
 
 
 0.931
CEM61413.1
ABC transporter, ATP-binding protein.
  
  
 0.853
CEM60619.1
ABC transporter, permease protein.
 
 
 0.827
CEM63155.1
ABC transporter, permease protein.
  
 
 0.775
CEM62980.1
Cobalt transport protein.
  
 
 0.740
CEM60617.1
ABC transporter, substrate-binding protein, family 5.
 
 
 0.720
CEM62528.1
ABC transporter, substrate-binding protein, family 5.
 
 
 0.712
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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