CEM61417.1 protein (Treponema phagedenis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CEM61417.1

Putative ATP synthase F0, A subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (598 aa)

Predicted Functional Partners:

CEM61416.1

0.822

CEM60990.1

0.774

fbpC

0.655

CEM62875.1

0.650

CEM61479.1

0.527

CEM63420.1

0.485

CEM61482.1

0.462

CEM63399.1

0.458

CEM63413.1

0.448

CEM61418.1

0.440

Your Current Organism:

Treponema phagedenis

NCBI taxonomy Id: 162
Other names: T. phagedenis

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CEM60990.1	CEM61417.1	TPHV1_130028	TPHV1_190024	Membrane hypothetical protein; No homology to any previously reported sequences.	Putative ATP synthase F0, A subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	0.774
CEM60990.1	CEM61479.1	TPHV1_130028	TPHV1_20016	Membrane hypothetical protein; No homology to any previously reported sequences.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.497
CEM60990.1	CEM61482.1	TPHV1_130028	TPHV1_20019	Membrane hypothetical protein; No homology to any previously reported sequences.	Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.	0.716
CEM60990.1	CEM62875.1	TPHV1_130028	TPHV1_50135	Membrane hypothetical protein; No homology to any previously reported sequences.	Transcriptional regulator, TetR family.	0.590
CEM60990.1	CEM63399.1	TPHV1_130028	TPHV1_90028	Membrane hypothetical protein; No homology to any previously reported sequences.	Cobalt transport protein.	0.633
CEM61416.1	CEM61417.1	TPHV1_190023	TPHV1_190024	ABC transporter, ATP-binding protein.	Putative ATP synthase F0, A subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	0.822
CEM61416.1	CEM61418.1	TPHV1_190023	TPHV1_190025	ABC transporter, ATP-binding protein.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.440
CEM61416.1	CEM61479.1	TPHV1_190023	TPHV1_20016	ABC transporter, ATP-binding protein.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.489
CEM61416.1	CEM61482.1	TPHV1_190023	TPHV1_20019	ABC transporter, ATP-binding protein.	Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.	0.407
CEM61416.1	CEM62875.1	TPHV1_190023	TPHV1_50135	ABC transporter, ATP-binding protein.	Transcriptional regulator, TetR family.	0.624
CEM61416.1	CEM63413.1	TPHV1_190023	TPHV1_90042	ABC transporter, ATP-binding protein.	Leucine carboxyl methyltransferase.	0.402
CEM61416.1	CEM63420.1	TPHV1_190023	TPHV1_90049	ABC transporter, ATP-binding protein.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.413
CEM61417.1	CEM60990.1	TPHV1_190024	TPHV1_130028	Putative ATP synthase F0, A subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Membrane hypothetical protein; No homology to any previously reported sequences.	0.774
CEM61417.1	CEM61416.1	TPHV1_190024	TPHV1_190023	Putative ATP synthase F0, A subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	ABC transporter, ATP-binding protein.	0.822
CEM61417.1	CEM61418.1	TPHV1_190024	TPHV1_190025	Putative ATP synthase F0, A subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.440
CEM61417.1	CEM61479.1	TPHV1_190024	TPHV1_20016	Putative ATP synthase F0, A subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.527
CEM61417.1	CEM61482.1	TPHV1_190024	TPHV1_20019	Putative ATP synthase F0, A subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.	0.462
CEM61417.1	CEM62875.1	TPHV1_190024	TPHV1_50135	Putative ATP synthase F0, A subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Transcriptional regulator, TetR family.	0.650
CEM61417.1	CEM63399.1	TPHV1_190024	TPHV1_90028	Putative ATP synthase F0, A subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Cobalt transport protein.	0.458
CEM61417.1	CEM63413.1	TPHV1_190024	TPHV1_90042	Putative ATP synthase F0, A subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Leucine carboxyl methyltransferase.	0.448