Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CEM61429.1Transporter, Ni2+-Co2+ transporter (NiCoT) family protein; Belongs to the NiCoT transporter (TC 2.A.52) family. (363 aa)    
Predicted Functional Partners:
CEM60395.1
Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function.
 
   
 0.808
CEM61430.1
Hypothetical protein; No homology to any previously reported sequences.
       0.773
cvpA
CvpA family protein.
  
     0.673
CEM61592.1
OmpA family protein.
  
     0.541
CEM61428.1
Antigen TyF1; Belongs to the Dps family.
       0.477
lepB-2
Signal peptidase I; Belongs to the peptidase S26 family.
  
     0.463
CEM61427.1
Hypothetical protein; No homology to any previously reported sequences.
       0.423
CEM62051.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.416
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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