Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CEM61451.1BioY family protein. (183 aa)    
Predicted Functional Partners:
CEM61450.1
ABC transporter, ATP-binding protein.
 
 0.998
CEM61449.1
Cobalt transport protein.
  
 0.983
CEM61480.1
Cobalt transport protein.
  
 0.928
CEM63025.1
Cobalt transport protein.
  
 0.928
CEM63399.1
Cobalt transport protein.
  
 0.928
CEM62980.1
Cobalt transport protein.
 
 
 0.735
CEM61059.1
Biotin--(acetyl-CoA-carboxylase) ligase.
 
   
 0.676
CEM62393.1
Hypothetical protein; No homology to any previously reported sequences.
  
  
 0.600
oadA
Oxaloacetate decarboxylase alpha chain.
 
   
 0.514
CEM61424.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
    0.446
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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