STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lptBPutative lipopolysaccharide transport protein B: ATP-binding component of ABC superfamily; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (290 aa)    
Predicted Functional Partners:
CEM62852.1
Permease, YjgP/YjgQ family.
 
 
 0.989
CEM62853.1
Permease, YjgP/YjgQ family.
 
 
 0.989
CEM61721.1
OstA-like protein.
  
  
 0.977
CEM61800.1
ABC transporter, ATP-binding protein.
     
 
0.900
CEM62903.1
Branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
      0.899
yaeT
Outer membrane protein assembly complex, YaeT protein.
 
  
 0.896
CEM61722.1
Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function.
     
 0.822
CEM61412.1
ABC transporter, ATP-binding protein.
 
    
0.783
CEM63251.1
Transporter, MotA/TolQ/ExbB proton channel family protein.
 
   
 0.783
oppD
Oligopeptide transporter subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Belongs to the ABC transporter superfamily.
 
     
0.761
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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