Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CEM61517.1ABC transporter, ATP-binding protein. (599 aa)    
Predicted Functional Partners:
CEM61518.1
ABC transporter, ATP-binding protein.
 
    
0.677
yvrO
Uncharacterized ABC transporter ATP-binding protein YvrO.
     
0.657
CEM60452.1
Peptidyl-prolyl cis-trans isomerase.
 
 
 
 0.436
CEM62277.1
FtsK/SpoIIIE family protein; Belongs to the FtsK/SpoIIIE/SftA family.
      
 0.426
folC
Bifunctional protein FolC; Belongs to the folylpolyglutamate synthase family.
  
   
 0.421
CEM60437.1
Phosphoribulokinase/uridine kinase family protein.
 
   0.414
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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