Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CEM61564.1Tetratricopeptide repeat protein. (390 aa)    
Predicted Functional Partners:
CEM62633.1
Tetratricopeptide repeat protein (modular protein).
 
 
 
 0.811
CEM61563.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.802
CEM61600.1
Tetratricopeptide repeat protein.
 
 
 
 0.799
CEM61172.1
Tetratricopeptide repeat protein.
 
 
 
 0.795
CEM62339.1
Tetratricopeptide repeat protein.
 
 
 
 0.794
CEM60452.1
Peptidyl-prolyl cis-trans isomerase.
  
 0.788
CEM61867.1
Tetratricopeptide repeat protein.
 
 
 0.783
rlmN
Putative dual-specificity RNA methyltransferase RlmN; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.
       0.779
CEM61566.1
Hypothetical protein; No homology to any previously reported sequences.
       0.773
CEM62631.1
Tetratricopeptide repeat protein.
 
     0.773
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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