Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CEM61600.1Tetratricopeptide repeat protein. (221 aa)    
Predicted Functional Partners:
CEM61564.1
Tetratricopeptide repeat protein.
 
 
 
 0.799
CEM62633.1
Tetratricopeptide repeat protein (modular protein).
 
 
 
 0.791
CEM61867.1
Tetratricopeptide repeat protein.
 
     0.765
CEM62632.1
Tetratricopeptide repeat protein.
 
    0.764
cdsA-2
Phosphatidate cytidylyltransferase.
  
     0.763
CEM62504.1
Tetratricopeptide repeat protein.
  
     0.758
CEM61165.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.752
CEM62631.1
Tetratricopeptide repeat protein.
  
     0.752
CEM61762.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
   
 0.749
CEM61172.1
Tetratricopeptide repeat protein.
  
     0.746
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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