STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yhfXPutative amino acid racemase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (388 aa)    
Predicted Functional Partners:
yhfW
Putative mutase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 0.988
yhfS
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
     0.953
php
Putative hydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 0.943
CEM61626.1
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.
 
  
 0.905
yhfU
Hypothetical protein; No homology to any previously reported sequences.
 
     0.880
CEM61630.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
     0.826
llaDCHIA
Modification methylase LlaDCHIA.
 
      0.637
CEM61628.1
Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function.
 
     0.548
trpS
Tryptophan--tRNA ligase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
 
      0.434
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.