Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CEM61630.1Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (310 aa)    
Predicted Functional Partners:
php
Putative hydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.862
CEM61626.1
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.
 
     0.855
yhfU
Hypothetical protein; No homology to any previously reported sequences.
 
     0.855
yhfW
Putative mutase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.834
yhfX
Putative amino acid racemase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.826
yhfS
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
     0.826
CEM62179.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
  
 0.681
nagA
N-acetylglucosamine-6-phosphate deacetylase.
  
  
 0.645
CEM61963.1
Putative Protein-N(pi)-phosphohistidine--sugar phosphotransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.585
CEM62560.1
PTS system, beta-glucoside-specific, IIABC component.
  
  
 0.562
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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