Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CEM61655.1HD domain protein. (395 aa)    
Predicted Functional Partners:
CEM61784.1
Diguanylate cyclase (GGDEF) domain protein (fragment).
 
 
 0.877
CEM61785.1
Diguanylate cyclase (GGDEF) domain protein (fragment).
 
  
 0.815
CEM63322.1
HD domain protein.
 
   
 0.789
CEM60911.1
Diguanylate cyclase (GGDEF) domain protein.
 
 
 0.782
CEM61101.1
Diguanylate cyclase (GGDEF) domain protein.
 
 
 0.767
CEM61102.1
Diguanylate cyclase (GGDEF) domain protein.
 
 
 0.738
CEM61656.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.600
CEM61310.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein (modular protein).
 
  
 0.539
cheR-2
CheR methyltransferase, SAM binding domain protein.
  
 
 0.415
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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