STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araBRibulokinase. (546 aa)    
Predicted Functional Partners:
araD
L-ribulose-5-phosphate 4-epimerase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 
 0.987
rpe
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
   
 0.908
ulaE
L-xylulose 5-phosphate 3-epimerase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
    
 0.902
CEM61097.1
Kinase, PfkB family.
    
 0.810
CEM61804.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
   
 0.805
rpiA
Ribose-5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
     
  0.800
CEM63355.1
Putative L-ribulose-5-phosphate 4-epimerase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.781
CEM61010.1
HAD hydrolase, family IIA; Belongs to the HAD-like hydrolase superfamily.
  
  
 0.401
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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