Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CEM61921.1Leucine Rich Repeat protein. (290 aa)    
Predicted Functional Partners:
CEM62479.1
Exported hypothetical protein; No homology to any previously reported sequences.
  
     0.775
CEM61285.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.771
CEM60452.1
Peptidyl-prolyl cis-trans isomerase.
    
 
 0.742
CEM60933.1
WD domain, G-beta repeat protein.
    
 
 0.537
CEM62499.1
Helicase C-terminal domain protein.
    
 0.499
CEM61920.1
Hypothetical protein; No homology to any previously reported sequences.
       0.432
pcp
Pyrrolidone-carboxylate peptidase; Removes 5-oxoproline from various penultimate amino acid residues except L-proline; Belongs to the peptidase C15 family.
    
   0.430
CEM62587.1
Putative ankyrin repeat-containing protein TP_0502; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
   
 0.406
CEM63123.1
Ankyrin repeat protein.
   
 0.406
CEM62433.1
Antioxidant, AhpC/TSA family.
   
 0.401
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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