Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CEM61960.1Peptidase, S54 family. (201 aa)    
Predicted Functional Partners:
exoA
Exodeoxyribonuclease.
       0.747
CEM62674.1
5-formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
  
  
 0.668
CEM62339.1
Tetratricopeptide repeat protein.
 
     0.604
CEM61762.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
    0.580
CEM60926.1
Stage II sporulation protein E.
  
     0.564
CEM62564.1
Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function.
   
   0.543
CEM63214.1
N-acetylmuramoyl-L-alanine amidase.
   
   0.543
BamD
Tetratricopeptide repeat protein.
 
     0.521
CEM61959.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.513
CEM61592.1
OmpA family protein.
  
   0.506
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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