Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
CEM62356.1Peptidase, S41 family; Belongs to the peptidase S41A family. (493 aa)    
Predicted Functional Partners:
CEM62358.1
Glycosyltransferase, WecB/TagA/CpsF family.
       0.819
CEM62357.1
Ribosomal RNA small subunit methyltransferase E; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
       0.816
CEM63457.1
Tetratricopeptide repeat protein.
   
 
 0.644
oadA
Oxaloacetate decarboxylase alpha chain.
  
    0.589
yjdI
Putative Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YjdI; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily.
       0.570
nifJ
Pyruvate-flavodoxin oxidoreductase.
   
 
 0.486
CEM62589.1
Penicillin-binding protein, 1A family.
  
     0.463
ydbK
Putative 2-oxoacid-flavodoxin fused oxidoreductase:conserved protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
   
 
 0.414
CEM61867.1
Tetratricopeptide repeat protein.
 
 
 
 0.409
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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