Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CEM62259.1Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (298 aa)    
Predicted Functional Partners:
CEM62258.1
Pseudouridine synthase, RluA family; Belongs to the pseudouridine synthase RluA family.
     
 0.819
CEM62260.1
Hypothetical protein; No homology to any previously reported sequences.
       0.631
CEM62257.1
Divergent PAP2 family.
       0.588
CEM62255.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.569
CEM62254.1
NQR2/RnfD/RnfE family protein.
       0.558
CEM61610.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.557
CEM62252.1
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.
       0.551
CEM62253.1
Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function.
       0.551
CEM62256.1
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.
       0.551
CEM60437.1
Phosphoribulokinase/uridine kinase family protein.
  
     0.540
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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