Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CEM62268.1Phospholipase, patatin family. (298 aa)    
Predicted Functional Partners:
CEM62267.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
     0.799
CEM62269.1
Cation diffusion facilitator family transporter; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
 
     0.788
ltaA
L-allo-threonine aldolase.
       0.734
CEM63415.1
TraG/TraD/VirD4 bacterial conjugation protein (fragment).
    
   0.554
CEM60743.1
ComEC/Rec2-like protein.
     
 0.534
CEM62266.1
Hypothetical protein; No homology to any previously reported sequences.
       0.473
nadE
NAD+ synthase; Belongs to the NAD synthetase family.
 
    0.470
CEM62265.1
Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function.
     
 0.459
CEM62148.1
Cytidine and deoxycytidylate deaminase zinc-binding region.
 
     0.417
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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