Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CEM62286.1Type I restriction modification DNA specificity domain protein. (656 aa)    
Predicted Functional Partners:
hsdR
Putative Type I site-specific deoxyribonuclease; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
  
 0.992
hsdM
Type I restriction enzyme EcoprrI M protein.
 
 
 0.989
bcgIA
Restriction enzyme BgcI subunit alpha (Includes: Adenine-specific methyltransferase activity).
 
 
 0.947
CEM61493.1
N-6 DNA Methylase.
 
 
 0.918
CEM62283.1
Virulence protein.
  
    0.914
CEM62660.1
Type I restriction enzyme HsdR protein N-terminal domain protein.
 
 
 0.885
CEM63422.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
 
 0.863
CEM61491.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
 
 0.856
CEM61492.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
 
 0.856
CEM61661.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
 
 0.856
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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