Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CEM62310.1ABC transporter, permease protein. (276 aa)    
Predicted Functional Partners:
CEM62309.1
ABC transporter, permease protein.
 0.994
CEM62308.1
ABC transporter, solute-binding protein.
 
  0.985
ycjV
Putative sugar transporter subunit: ATP-binding component of ABC superfamily transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 0.982
CEM63055.1
ABC transporter, permease protein.
 
 0.976
CEM63054.1
ABC transporter, permease protein.
  
  
 
0.921
CEM60649.1
ABC transporter, permease protein.
 
 0.916
CEM63056.1
ABC transporter, solute-binding protein.
 
  0.908
CEM61106.1
ABC transporter, permease protein.
 
 0.898
amyD
Putative starch degradation products transport system permease protein AmyD; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 
 0.895
CEM63233.1
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.
 
 
 0.868
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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